root/luc

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Rev Chgset Date Author Log Message
(edit) @1022 [1022] 18 months luc Minor changes and possible mistake line 310 sel_genique_fct
(edit) @1021 [1021] 19 months luc deal with non-even iterations
(edit) @1020 [1020] 19 months luc works!!!!
(edit) @1019 [1019] 19 months luc optimize!
(edit) @1018 [1018] 19 months luc workage?
(edit) @1017 [1017] 19 months vasi modify for mammoth
(edit) @1016 [1016] 19 months luc cxx
(edit) @1015 [1015] 19 months luc typo
(edit) @1014 [1014] 19 months luc compiles!
(edit) @1013 [1013] 19 months luc more compiles
(edit) @1012 [1012] 19 months luc Get things into svn
(edit) @1011 [1011] 19 months luc working on clumeq--make hates me!!!!!
(edit) @1010 [1010] 19 months vasi set ignore properly
(edit) @1009 [1009] 19 months vasi make worky on rqchp
(edit) @1008 [1008] 19 months luc ignore run files
(edit) @1007 [1007] 19 months luc add mpi
(edit) @1006 [1006] 19 months luc makefile and sequence length
(edit) @1005 [1005] 19 months luc It seems to work.
(edit) @1004 [1004] 19 months luc About to make changes, commiting just in case
(edit) @1003 [1003] 20 months luc Another backup
(edit) @999 [999] 20 months luc Now faster with inheritance
(edit) @998 [998] 20 months luc New function remove_polymorphism
(edit) @997 [997] 20 months luc Testing without adaptation
(edit) @996 [996] 20 months luc The most recent version
(edit) @995 [995] 21 months luc I think it works_solved stupid bug with mutation frequency
(edit) @994 [994] 21 months luc I think it works_solved stupid bug with mutation frequency
(edit) @993 [993] 21 months vasi print to files
(edit) @992 [992] 21 months vasi check for trouve == 0
(edit) @991 [991] 21 months luc new program
(edit) @990 [990] 21 months luc ignore
(edit) @947 [947] 2 years luc Added a parameter : seed for part 1
(edit) @936 [936] 2 years luc Fixed formulas for recombination
(edit) @918 [918] 2 years luc Fixed an error in part 1
(edit) @917 [917] 2 years vasi fix warnings, and rho0 bug
(edit) @916 [916] 2 years vasi no more crash
(edit) @915 [915] 2 years vasi dumb assertion…
(edit) @914 [914] 2 years vasi assert
(edit) @913 [913] 2 years luc Weird bug with rho0
(edit) @911 [911] 2 years luc threads!
(edit) @910 [910] 2 years luc parameterize number of samples
(edit) @909 [909] 2 years luc remove txt files
(edit) @908 [908] 2 years luc works with array of samples
(edit) @906 [906] 2 years vasi fix matrix reading
(edit) @905 [905] 2 years luc removed the crap
(edit) @904 [904] 2 years luc 32 loci is a maximum
(edit) @902 [902] 2 years luc Fixed problem with eliminate_marker_only
(edit) @901 [901] 2 years luc Added loci, fixed translate_bits
(edit) @896 [896] 2 years luc Beginning simulations
(edit) @895 [895] 2 years luc Now it really works.
(edit) @894 [894] 2 years luc I think it works. Must check formulas.
(edit) @892 [892] 2 years luc Preparing an assign_para_value fct
(edit) @891 [891] 2 years luc Program seems functional : needs to be checked for efficiency
(edit) @890 [890] 2 years luc First part seems to be functional
(edit) @888 [888] 2 years luc Tree functional, mutation doesn't spread correctly.
(edit) @887 [887] 2 years luc Latest version : Beta doesn't compute right because vector_sequence is not …
(edit) @884 [884] 2 years luc event_rec isn't complete
(edit) @883 [883] 2 years luc Recoding part 1
(edit) @880 [880] 2 years luc Minor change in prior_prob
(edit) @879 [879] 2 years luc Fixed problem with prior_prob
(edit) @878 [878] 2 years luc 36 secs to generate 100 trees
(edit) @877 [877] 2 years luc Reduced the sample size to 100
(edit) @876 [876] 2 years luc Code might work, but getting a complete tree takes a while
(edit) @875 [875] 2 years luc Fixed problem with choose_event
(edit) @868 [868] 2 years luc Problem with mutation
(edit) @867 [867] 2 years luc Ready to create iterative structure, added two more files
(edit) @864 [864] 2 years luc Testing functions, must now test adjust_compat_table
(edit) @863 [863] 2 years luc It compiles!
(edit) @845 [845] 2 years vasi done for the day
(edit) @844 [844] 2 years vasi at least it almost compiles
(edit) @843 [843] 2 years vasi fix constructor
(edit) @842 [842] 2 years luc taux.hpp : How to get the class to initialize properly?
(edit) @841 [841] 2 years luc taux.hpp : How to get the class to initialize properly?
(edit) @840 [840] 2 years luc taux.hpp : How to get the class to initialize properly?
(edit) @839 [839] 2 years luc Seg fault at 40:State.cpp
(edit) @838 [838] 2 years luc calc_nombre_mutant compiles
(edit) @837 [837] 2 years luc calc_nombre_mutants is complete, but does it work?
(edit) @836 [836] 2 years luc prior prob
(edit) @835 [835] 2 years luc warnings suck!
(edit) @834 [834] 2 years vasi fixup
(edit) @833 [833] 2 years vasi add likelihood
(edit) @832 [832] 2 years vasi add state header
(edit) @831 [831] 2 years vasi just starting to add state
(edit) @830 [830] 2 years luc function in main.cpp:1201 returns a non-sensical value
(edit) @829 [829] 2 years luc n_case and n_control are now external variables, parent1 and parent2, …
(edit) @828 [828] 2 years luc calc_prob complete
(edit) @827 [827] 2 years luc New fct compiles, now testing
(edit) @826 [826] 2 years luc New fct calc_prob_mut
(edit) @825 [825] 2 years luc Fct calc_num_mutant is complete and functional
(edit) @824 [824] 2 years luc Fct calc_prob_recomb seems functional
(edit) @823 [823] 2 years luc Fct calc_prob_recomb compiles
(edit) @822 [822] 2 years luc Fct calc_prob_recomb might be complete
(edit) @821 [821] 2 years luc still fixing type_recomb
(edit) @820 [820] 2 years luc fixed type_recomb
(edit) @819 [819] 2 years luc recomb fct becoming increasingly complicated
(edit) @818 [818] 2 years luc Programming function for recomb, prog fct type_recomb, must test it, prog …
(edit) @817 [817] 2 years luc Programming function for recomb, fct for coa_inter seems to work
(edit) @816 [816] 2 years luc It compiles, but does it work?
(edit) @815 [815] 2 years luc Nouveau fichier de fcts liees a calcul des probs de trans
(edit) @814 [814] 2 years luc Unchecked
(edit) @813 [813] 2 years luc Working on coa_inter events, program compiles
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